From the Egypt Demographic and Health Survey 2005:

Total consanguineous marriages = 32.2%
Total first cousin marriages = 17.5%; inbreeding coefficient = 0.0109
Total second cousin marriages = 7.3%; inbreeding coefficient = 0.0011
Total “other blood relative” marriages = 7.4%

Total FBD marriages = 11%; inbreeding coefficient = 0.0069

Urban consanguineous marriages = 24%
Rural consanguineous marriages = 37.9%

Urban 1C = 13%; inbreeding coefficient = 0.0081
Urban 2C = 6%; inbreeding coefficient = 0.0009
Rural 1C = 20.6%; inbreeding coefficient = 0.0129
Rural 2C = 8.3%; inbreeding coefficient = 0.0013

Urban Governorates = 22.5%
Lower Egypt urban = 19.4%
Lower Egypt rural = 29%
Upper Egypt urban = 29.4%
Upper Egypt rural = 48.5%
Frontier Governorates = 41.4%

Urban Governorates = Cairo, Alexandria, Port Said, and Suez (no rural population)
Lower Egypt = 9 Lower Egypt governorates totally (Nile Delta)
Upper Egypt = 8 Upper Egypt governorates totally (Nile Valley)
Frontier Governorates = 5 governorates on eastern/western boundaries

Collection period: 2005
Study population: A nationally representative sample of ever-married women aged 15-49.
Sample size: 19,474
Location: Nation-wide.

From the abstract of Endogamy in Egyptian Nubia:

“In a sample of 282 marriages in New Nubia in Egypt, 39% were between first cousins and 21% between less closely related kin. The average number of liveborn offspring in first-cousin marriages was higher than in marriages between more distant relations and unrelated spouses, but the number of deaths among children of first-cousin couples was also higher.”

Total Nubian consanguinity rate = 60% (60.5%*)

1C consanguinity rate = 39%
<1C consanguinity rate = 21%

Collection period: 1965-67
Study population: Household survey
Sample size: 282
Location: New Nubia

*According to consang.net.

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Compare:

1965-67 New Nubian 1C consanguinity rate = 39%
1967-68 1C Fadetchi consanguinity rate = 45.5%
1967-68 1C Kenuzi consanguinity rate = 47.2%
1967-68 1C Arab consanguinity rate = 41.5%

From the abstract of Genetic Studies of Egyptian Nubian Populations. I.:

“Egyptian Nubians, who lived in an isolated area for many centuries, have migrated because of the construction of the Aswan High Dam and the subsequent flooding of their lands. They have settled in the valley of Kom Ombo, north of Aswan. Three major groups of Nubians can be distinguished: Fadetchi, Kenuzi and Arabs. Each group has its characteristic language and traditions, and constitutes an almost closed community. This report, one of a series on the genetical characteristics of the Nubian population, deals with the types and frequency of consanguineous marriages. A large number of married people and well-grown schoolchildren were interviewed. Analysis of the data showed that the Nubians have remarkably high consanguinity rates. These were 72.9, 75.4, 80.4% for the Fadetchi, Kenuzi and Arab communities. Amongst the consanguineous marriages, those of first cousins accounted for 45.5, 47.2 and 41.5% of the totals for the Fadetchi, Kenuzi and Arabs, respectively….”

Total Nubian consanguinity rate = unknown (63.6%*)
Fadetchi consanguinity rate = 72.9% (61.4%*)
Kenuzi consanguinity rate = 75.4% (62.0%*)
Arab consangunity rate = 80.4% (69.8%*)

1C Fadetchi consanguinity rate = 45.5%
1C Kenuzi consanguinity rate = 47.2%
1C Arab consanguinity rate = 41.5%

Collection period: 1967-68
Study population: Household survey
Sample size: unknown (1,782 [611, 757, 414]*)
Location: The valley of Kom Ombo, north of Aswan.

*According to consang.net.

From Consanguinity and incidence of thalassaemia in Egypt:

“Of the 505 parental couples 177 were first cousins, i.e. 23% [23.2%]. Among the probands 91 were married and 13 of them to first cousins, i.e. 14% [14.4%]. The difference is not statistically significant (0.05<P<0.1) but may indicate a secular downward trend in the incidence of first-cousing marriages in Egypt….

The inbreeding coefficient (F1) of a first-cousin marriage is 1/16 or 0.0625. Consequently, the F1 of the probands' parental generation is 117/505 x 0.0625 or 0.0145 and for the married probands 13/91 x 0.0625 or 0.0089. For the following calculations we have used a weighted average of the two inbreeding coefficients, which is F1 = 0.0137."

First cousin marriages, parents = 23.2%
First cousin marriages, probands = 14.4%
First cousin marriages, total (weighted average) = 18.4%

Inbreeding coefficient = 0.0137 (weighted average)

Note that consang.net uses the figure of 0.0145 for the inbreeding coefficient, i.e. the number for just the parents, not including the probands.

Collection period: 1979-81
Study population: University/work survey; health clinic survey.
Sample size: 505 probands + 505 parental couples
Location: Cairo. The authors believed the samples to be representative, despite the fact that all the individuals currently lived in Cairo, since many of them had been born in other Delta/Nile Governorates. However, 132 of the male probands were students at Cairo University and another 74 (male and female) were employees at a corporation. These 206 individuals may not be representative of the population of Egypt on the whole (i.e. they may have above average IQs and, therefore, possibly were less likely to come from inbred families). 299 of the probands (female) were outpatients at gynecological clinics and, therefore, are likely more representative. *Note: the study does not include the Frontier Governorates.

see also consang.net.

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So far then:

1979-81 – First cousin marriages = 18.4%
2000 – First cousin marriages = 21.8%
2008 – First cousin marriages = 15.6%

From the Egypt Demographic and Health Survey 2008:

Total consanguineous marriages = 29.7%
Total first cousin marriages = 15.6%; inbreeding coefficient = 0.0098
Total second cousin marriages = 7%; inbreeding coefficient = 0.00109
Total “other blood relative” marriages = 7.1%

Total FBD marriages = 9.8%; inbreeding coefficient = 0.0061

Urban consanguineous marriages = 23.2%
Rural consanguineous marriages = 34.3%

Urban 1C = 12.4%; inbreeding coefficient = 0.0078
Urban 2C = 5.3%; inbreeding coefficient = 0.0008
Rural 1C = 17.9%; inbreeding coefficient = 0.0112
Rural 2C = 8.3%; inbreeding coefficient = 0.0013

Urban Governorates = 23.2%
Lower Egypt urban = 18%
Lower Egypt rural = 25.3%
Upper Egypt urban = 28.2%
Upper Egypt rural = 47.2%
Frontier Governorates = 34.2%

Urban Governorates = Cairo, Alexandria, Port Said, and Suez (no rural population)
Lower Egypt = 9 Lower Egypt governorates totally (Nile Delta)
Upper Egypt = 8 Upper Egypt governorates totally (Nile Valley)
Frontier Governorates = 5 governorates on eastern/western boundaries

Collection period: 2008
Study population: A nationally representative sample of ever-married women aged 15-49.
Sample size: 16,527
Location: Nation-wide.

From the Egypt Demographic and Health Survey 2000:

Total consanguineous marriages = 37.8%
Total first cousin marriages = 21.8%; inbreeding coefficient = 0.0136
Total second cousin marriages = 10.3%; inbreeding coefficient = 0.0016
Total “other blood relative” marriages = 6.1%

Total FBD marriages = 13.2%; inbreeding coefficient = 0.0083

Urban consanguineous marriages = 29.7%
Rural consanguineous marriages = 43.9%

Urban 1C = 16.4%; inbreeding coefficient = 0.0103
Urban 2C = 7.9%; inbreeding coefficient = 0.0012
Rural 1C = 26%; inbreeding coefficient = 0.0163
Rural 2C = 11.4%; inbreeding coefficient = 0.0018

Urban Governorates = 29.1%
Lower Egypt urban = 25.2%
Lower Egypt rural = 36.6%
Upper Egypt urban = 35.3%
Upper Egypt rural = 53.5%
Frontier Governorates = 46.2%

Urban Governorates = Cairo, Alexandria, Port Said, and Suez (no rural population)
Lower Egypt = 9 Lower Egypt governorates totally (Nile Delta)
Upper Egypt = 8 Upper Egypt governorates totally (Nile Valley)
Frontier Governorates = 5 governorates on eastern/western boundaries

Collection period: 2000
Study population: A nationally representative sample of ever-married women aged 15-49.
Sample size: 15,573
Location: Nation-wide.